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   <div id="projectname">BEAGLE
   &#160;<span id="projectnumber">2.0.0</span>
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   <div id="projectbrief">An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics</div>
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<div class="contents">
<div class="textblock">Here is a list of all documented file members with links to the documentation:</div>

<h3><a class="anchor" id="index_b"></a>- b -</h3><ul>
<li>BEAGLE_ERROR_FLOATING_POINT
: <a class="el" href="beagle_8h.html#a9e61de870cc34893168a88fe6823dfcea267dcbe8ced105decc94598ba2be51ba">beagle.h</a>
</li>
<li>BEAGLE_ERROR_GENERAL
: <a class="el" href="beagle_8h.html#a9e61de870cc34893168a88fe6823dfcea45c3bd53fdd83865d927202d0d582299">beagle.h</a>
</li>
<li>BEAGLE_ERROR_NO_IMPLEMENTATION
: <a class="el" href="beagle_8h.html#a9e61de870cc34893168a88fe6823dfcea74be6f002aba021c7093dfe50b44f1ed">beagle.h</a>
</li>
<li>BEAGLE_ERROR_NO_RESOURCE
: <a class="el" href="beagle_8h.html#a9e61de870cc34893168a88fe6823dfceaec9b03ad5cd754a99ed84e1755704beb">beagle.h</a>
</li>
<li>BEAGLE_ERROR_OUT_OF_MEMORY
: <a class="el" href="beagle_8h.html#a9e61de870cc34893168a88fe6823dfceaf31bb198b162f0d9ed2e0490a475409d">beagle.h</a>
</li>
<li>BEAGLE_ERROR_OUT_OF_RANGE
: <a class="el" href="beagle_8h.html#a9e61de870cc34893168a88fe6823dfcea1118b576b6d5e1372f757ec246acd203">beagle.h</a>
</li>
<li>BEAGLE_ERROR_UNIDENTIFIED_EXCEPTION
: <a class="el" href="beagle_8h.html#a9e61de870cc34893168a88fe6823dfcea3fd3b3dc476c527884e6db3dc0d13738">beagle.h</a>
</li>
<li>BEAGLE_ERROR_UNINITIALIZED_INSTANCE
: <a class="el" href="beagle_8h.html#a9e61de870cc34893168a88fe6823dfceaba333086a5777117202ed0f16109157a">beagle.h</a>
</li>
<li>BEAGLE_FLAG_COMPUTATION_ASYNCH
: <a class="el" href="beagle_8h.html#a3f3abf6b7c463b689a26ec83fb14bddeac2cf9217aa4e7a2e002746528a8ba29b">beagle.h</a>
</li>
<li>BEAGLE_FLAG_COMPUTATION_SYNCH
: <a class="el" href="beagle_8h.html#a3f3abf6b7c463b689a26ec83fb14bddeac4e28e01f5d95262033f72410ca57c89">beagle.h</a>
</li>
<li>BEAGLE_FLAG_EIGEN_COMPLEX
: <a class="el" href="beagle_8h.html#a3f3abf6b7c463b689a26ec83fb14bddea5a64736d6ca8cd54532e35f597671f16">beagle.h</a>
</li>
<li>BEAGLE_FLAG_EIGEN_REAL
: <a class="el" href="beagle_8h.html#a3f3abf6b7c463b689a26ec83fb14bddea96ef202a6ec8fc3754dc3095b30a87fb">beagle.h</a>
</li>
<li>BEAGLE_FLAG_FRAMEWORK_CPU
: <a class="el" href="beagle_8h.html#a3f3abf6b7c463b689a26ec83fb14bddeacc951e8ceb79f83b91977b2cea646917">beagle.h</a>
</li>
<li>BEAGLE_FLAG_FRAMEWORK_CUDA
: <a class="el" href="beagle_8h.html#a3f3abf6b7c463b689a26ec83fb14bddea40c7b4711118fb6fa14e697a698eda87">beagle.h</a>
</li>
<li>BEAGLE_FLAG_FRAMEWORK_OPENCL
: <a class="el" href="beagle_8h.html#a3f3abf6b7c463b689a26ec83fb14bddea04dcbc29ff83699be424c21b38e57d06">beagle.h</a>
</li>
<li>BEAGLE_FLAG_INVEVEC_STANDARD
: <a class="el" href="beagle_8h.html#a3f3abf6b7c463b689a26ec83fb14bddeadbd1b3e83d25b5fae3a14a724b24cec2">beagle.h</a>
</li>
<li>BEAGLE_FLAG_INVEVEC_TRANSPOSED
: <a class="el" href="beagle_8h.html#a3f3abf6b7c463b689a26ec83fb14bddea9fc181aac842ebac6d51ccb19cf0e2ca">beagle.h</a>
</li>
<li>BEAGLE_FLAG_PRECISION_DOUBLE
: <a class="el" href="beagle_8h.html#a3f3abf6b7c463b689a26ec83fb14bddea83963bbb1062fd6c060553de8dd6b429">beagle.h</a>
</li>
<li>BEAGLE_FLAG_PRECISION_SINGLE
: <a class="el" href="beagle_8h.html#a3f3abf6b7c463b689a26ec83fb14bddea6efa1e464b74cfcf6e7317d79bf1c085">beagle.h</a>
</li>
<li>BEAGLE_FLAG_PROCESSOR_CELL
: <a class="el" href="beagle_8h.html#a3f3abf6b7c463b689a26ec83fb14bddea5dcb70fa15d216e8295982953d535ff9">beagle.h</a>
</li>
<li>BEAGLE_FLAG_PROCESSOR_CPU
: <a class="el" href="beagle_8h.html#a3f3abf6b7c463b689a26ec83fb14bddea9aea9b1db1765a059e5f0c994c7ff5b4">beagle.h</a>
</li>
<li>BEAGLE_FLAG_PROCESSOR_FPGA
: <a class="el" href="beagle_8h.html#a3f3abf6b7c463b689a26ec83fb14bddea9480c27a220b39df8980176376e27bbf">beagle.h</a>
</li>
<li>BEAGLE_FLAG_PROCESSOR_GPU
: <a class="el" href="beagle_8h.html#a3f3abf6b7c463b689a26ec83fb14bddeaf7a580b8584fbdba42c5a1bab2b6ed6c">beagle.h</a>
</li>
<li>BEAGLE_FLAG_PROCESSOR_OTHER
: <a class="el" href="beagle_8h.html#a3f3abf6b7c463b689a26ec83fb14bddea3e2ddc258bd1d83c75bbeff3f57c94d8">beagle.h</a>
</li>
<li>BEAGLE_FLAG_PROCESSOR_PHI
: <a class="el" href="beagle_8h.html#a3f3abf6b7c463b689a26ec83fb14bddeaad2f12434a5b2882925c836976cf49cc">beagle.h</a>
</li>
<li>BEAGLE_FLAG_SCALERS_LOG
: <a class="el" href="beagle_8h.html#a3f3abf6b7c463b689a26ec83fb14bddea90091808850e51109fcb2f06fc8eb6f3">beagle.h</a>
</li>
<li>BEAGLE_FLAG_SCALERS_RAW
: <a class="el" href="beagle_8h.html#a3f3abf6b7c463b689a26ec83fb14bddea81574eae3cca4fd42b3b34d731555b64">beagle.h</a>
</li>
<li>BEAGLE_FLAG_SCALING_ALWAYS
: <a class="el" href="beagle_8h.html#a3f3abf6b7c463b689a26ec83fb14bddea11d8bbb56c0d104bf29e877f90f12935">beagle.h</a>
</li>
<li>BEAGLE_FLAG_SCALING_AUTO
: <a class="el" href="beagle_8h.html#a3f3abf6b7c463b689a26ec83fb14bddea78667e7bb79ac6c002d0180d3e27d6b5">beagle.h</a>
</li>
<li>BEAGLE_FLAG_SCALING_DYNAMIC
: <a class="el" href="beagle_8h.html#a3f3abf6b7c463b689a26ec83fb14bddea8c750c64eb7c532c40a1b520c7253656">beagle.h</a>
</li>
<li>BEAGLE_FLAG_SCALING_MANUAL
: <a class="el" href="beagle_8h.html#a3f3abf6b7c463b689a26ec83fb14bddea44746eb12a08bd5427ecf7e0508e02e9">beagle.h</a>
</li>
<li>BEAGLE_FLAG_THREADING_NONE
: <a class="el" href="beagle_8h.html#a3f3abf6b7c463b689a26ec83fb14bddea444ce15e77f6cfaeb77ee1762925cd77">beagle.h</a>
</li>
<li>BEAGLE_FLAG_THREADING_OPENMP
: <a class="el" href="beagle_8h.html#a3f3abf6b7c463b689a26ec83fb14bddeac522542d33f45928656aa2dfe478b3ce">beagle.h</a>
</li>
<li>BEAGLE_FLAG_VECTOR_AVX
: <a class="el" href="beagle_8h.html#a3f3abf6b7c463b689a26ec83fb14bddeab55cd0f09a8c91e5d2d51b239515da4a">beagle.h</a>
</li>
<li>BEAGLE_FLAG_VECTOR_NONE
: <a class="el" href="beagle_8h.html#a3f3abf6b7c463b689a26ec83fb14bddea538654597350cea65553c70189ceb107">beagle.h</a>
</li>
<li>BEAGLE_FLAG_VECTOR_SSE
: <a class="el" href="beagle_8h.html#a3f3abf6b7c463b689a26ec83fb14bddea6f9a787ae342115c27a7437e8b0d9dc6">beagle.h</a>
</li>
<li>BEAGLE_OP_COUNT
: <a class="el" href="beagle_8h.html#a2487a1c99f4214cd3a70468d0ccac55ca907d2c6aac07be265a496476a55216e5">beagle.h</a>
</li>
<li>BEAGLE_OP_NONE
: <a class="el" href="beagle_8h.html#a2487a1c99f4214cd3a70468d0ccac55ca2eb262bbe41b1dbeff3e189d8de65b04">beagle.h</a>
</li>
<li>BEAGLE_SUCCESS
: <a class="el" href="beagle_8h.html#a9e61de870cc34893168a88fe6823dfcea12aea4769c1be89867846782925b1cbe">beagle.h</a>
</li>
<li>beagleAccumulateScaleFactors()
: <a class="el" href="beagle_8h.html#aea0ba5ba75cda49363b82f48def77847">beagle.h</a>
</li>
<li>beagleCalculateEdgeLogLikelihoods()
: <a class="el" href="beagle_8h.html#a1622661032ea7959e985592d86a9fa77">beagle.h</a>
</li>
<li>beagleCalculateRootLogLikelihoods()
: <a class="el" href="beagle_8h.html#a967f3d7704eb53e34b091b86a7e9baee">beagle.h</a>
</li>
<li>beagleConvolveTransitionMatrices()
: <a class="el" href="beagle_8h.html#a50aff3cb6241e9fe59a0cb5c5cc29ee0">beagle.h</a>
</li>
<li>beagleCopyScaleFactors()
: <a class="el" href="beagle_8h.html#a66c460f21b89acb0ad551be0d9143133">beagle.h</a>
</li>
<li>beagleCreateInstance()
: <a class="el" href="beagle_8h.html#a8bbfa8c48d0cd2dbc8f253a51f5b777e">beagle.h</a>
</li>
<li>beagleFinalize()
: <a class="el" href="beagle_8h.html#a7c5d6a18112618e6e4955d7f7dc22617">beagle.h</a>
</li>
<li>beagleFinalizeInstance()
: <a class="el" href="beagle_8h.html#aa35df026165d96afb3a09079126666dc">beagle.h</a>
</li>
<li>BeagleFlags
: <a class="el" href="beagle_8h.html#a3f3abf6b7c463b689a26ec83fb14bdde">beagle.h</a>
</li>
<li>beagleGetCitation()
: <a class="el" href="beagle_8h.html#aa057301859e993ba24d5b9fdc7f7ecd8">beagle.h</a>
</li>
<li>beagleGetPartials()
: <a class="el" href="beagle_8h.html#a6f698c0acaf059732079e854682ab8bb">beagle.h</a>
</li>
<li>beagleGetResourceList()
: <a class="el" href="beagle_8h.html#a389ba7c4a2e4ec083fada4b43d15df16">beagle.h</a>
</li>
<li>beagleGetSiteDerivatives()
: <a class="el" href="beagle_8h.html#a7bd7856124724dc18058935d8aaa08ec">beagle.h</a>
</li>
<li>beagleGetSiteLogLikelihoods()
: <a class="el" href="beagle_8h.html#a8de7a453b2d4a89be02f75f8e9ae9ab9">beagle.h</a>
</li>
<li>beagleGetTransitionMatrix()
: <a class="el" href="beagle_8h.html#a4054c89db17dd5cc50c0f1c077bee8c8">beagle.h</a>
</li>
<li>beagleGetVersion()
: <a class="el" href="beagle_8h.html#a7548767f2cb3af22eeaec53033b826e7">beagle.h</a>
</li>
<li>BeagleOpCodes
: <a class="el" href="beagle_8h.html#a2487a1c99f4214cd3a70468d0ccac55c">beagle.h</a>
</li>
<li>beagleRemoveScaleFactors()
: <a class="el" href="beagle_8h.html#a0703dedf208d98a4b86ea8ee0b2e358d">beagle.h</a>
</li>
<li>beagleResetScaleFactors()
: <a class="el" href="beagle_8h.html#ad0b1d6509865e06715cf96b7f5ec0b13">beagle.h</a>
</li>
<li>BeagleReturnCodes
: <a class="el" href="beagle_8h.html#a9e61de870cc34893168a88fe6823dfce">beagle.h</a>
</li>
<li>beagleSetCategoryRates()
: <a class="el" href="beagle_8h.html#a404a18af42b3eb11d1d7dc8c86204ce8">beagle.h</a>
</li>
<li>beagleSetCategoryWeights()
: <a class="el" href="beagle_8h.html#a9e162e36113dfd5edb1dc57c2e99e3b5">beagle.h</a>
</li>
<li>beagleSetEigenDecomposition()
: <a class="el" href="beagle_8h.html#aae27b7b658d2a30a520190915ac10ae3">beagle.h</a>
</li>
<li>beagleSetPartials()
: <a class="el" href="beagle_8h.html#a4d9587451dddf791c2b28de95b91a8aa">beagle.h</a>
</li>
<li>beagleSetPatternWeights()
: <a class="el" href="beagle_8h.html#aebbfc9e38a2dd362b0f03f29cab42ac6">beagle.h</a>
</li>
<li>beagleSetStateFrequencies()
: <a class="el" href="beagle_8h.html#aed8f0f07b5510150efe1b72df2270f4d">beagle.h</a>
</li>
<li>beagleSetTipPartials()
: <a class="el" href="beagle_8h.html#a8da6fcc385325ac71c0268ba49c91735">beagle.h</a>
</li>
<li>beagleSetTipStates()
: <a class="el" href="beagle_8h.html#a248ac2d4e93da19d4598a488545beb3a">beagle.h</a>
</li>
<li>beagleSetTransitionMatrices()
: <a class="el" href="beagle_8h.html#a72c7aac15b0cc06f03e6177ad0a161e6">beagle.h</a>
</li>
<li>beagleSetTransitionMatrix()
: <a class="el" href="beagle_8h.html#ac209b67480022546bed413034bf771a0">beagle.h</a>
</li>
<li>beagleUpdatePartials()
: <a class="el" href="beagle_8h.html#a1c6335b5efc17f331282daec82e94226">beagle.h</a>
</li>
<li>beagleUpdateTransitionMatrices()
: <a class="el" href="beagle_8h.html#a5528ac9d57faaa14947260a297496269">beagle.h</a>
</li>
<li>beagleWaitForPartials()
: <a class="el" href="beagle_8h.html#ab34345b9feb1a92a9ed247dbb93192b4">beagle.h</a>
</li>
</ul>
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